Difference between revisions of "File List"

From SICDB Doc
Jump to navigation Jump to search
 
(11 intermediate revisions by the same user not shown)
Line 1: Line 1:
The SICdb dataset consists from data files, a reference file
The SICdb dataset consists from 7 files. Additional data is found on our [https://github.com/nrodemund/sicdb github repository], refer to [[Get Started]] for usage details.


== Data Files ==
== Data Files ==
Line 5: Line 5:
All data files are gzip compressed RFC4180 comma seperated files.
All data files are gzip compressed RFC4180 comma seperated files.


=== cases.csv.gz ===
{| class="wikitable"
Contains basic data about admissions to icu. See [[Case Data]] for table details and [[Case Description]].
|+ Files
|-
! Name !! Short description
|-
| [[Case Data|cases.csv.gz]]  || Contains basic data about admissions to icu. See [[Case Data]] for table details and [[Case Description]].  
|-
| [[d_references|d_references.csv.gz]] ||  Contains the dictionary for all encoded fields in the SICdb dataset.  ||
|-
| [[data_float_h|data_float_h.csv.gz]] || Contains hourly aggregated float data like monitor [[Signal Data|signals]] or respirator settings. Additionally raw minute data is included.See [[data_float_h]] and [[Signal Data]] for further information. ||
|-
|  [[data_ref|data_ref.csv.gz]] || Contains encoded (nominal) data related to an admission. ||
|-
| [[Laboratory Data|laboratory.csv.gz]] || Contains laboratory results. || 
|-
| [[Medication Data|medication.csv.gz]] || Contains data about medication given during ICU stay. || 
|-
| [[Data range|data_range.csv.gz]] || Contains ranged data (from/to) ||
|-
| [[Unitlog|unitlog.csv.gz]] || Information about the patient's stay  || 
|}


=== d_references.csv.gz ===
== Configuration Files ==
 
Contains the dictionary for all encoded fields in the SICdb dataset. See [[d_references]] for further information.
 
=== data_float_h.csv.gz ===
 
Contains hourly aggregated float data like monitor [[Signal Data|signals]] or respirator settings. Additionally raw minute data is included.See [[data_float_h]] and [[Signal Data]] for further information.
 
=== data_ref.csv.gz ===
 
Contains encoded (nominal) data related to a case.See [[data_ref]] for further information.
 
=== laboratory.csv.gz ===


Contains laboratory results. See [[Laboratory Data]] for further information.
This data is found on our [https://github.com/nrodemund/sicdb github repository].
 
=== medication.csv.gz ===
 
Contains data about medication given during ICU stay. See [[Medication Data]] for further information.
 
=== treatment.csv.gz ===
 
Contains data about treatment. See [[Treatment Data]] for further information.
 
=== unitlog.csv.gz ===
 
See [[Unitlog]] for further information.
 
== Configuration Files ==


=== docker-compose.yml ===
=== docker-compose.yml ===

Latest revision as of 10:31, 9 November 2022

The SICdb dataset consists from 7 files. Additional data is found on our github repository, refer to Get Started for usage details.

Data Files

All data files are gzip compressed RFC4180 comma seperated files.

Files
Name Short description
cases.csv.gz Contains basic data about admissions to icu. See Case Data for table details and Case Description.
d_references.csv.gz Contains the dictionary for all encoded fields in the SICdb dataset.
data_float_h.csv.gz Contains hourly aggregated float data like monitor signals or respirator settings. Additionally raw minute data is included.See data_float_h and Signal Data for further information.
data_ref.csv.gz Contains encoded (nominal) data related to an admission.
laboratory.csv.gz Contains laboratory results.
medication.csv.gz Contains data about medication given during ICU stay.
data_range.csv.gz Contains ranged data (from/to)
unitlog.csv.gz Information about the patient's stay

Configuration Files

This data is found on our github repository.

docker-compose.yml

This file is needed to install our database software. See Software Description for further information, and Get Started for installation instructions.

DatasetConfiguration.conf

Our database software needs this metadata for building up the database. It contains field data types and SQL table structure, that cannot be saved in .csv files.

RooData Folder and contents

This data is used by our software and contains field and table configurations.